We developed a Shiny application to deliver fast and flexible tumor-normal gene expression analysis based on TCGA and GTEx data. Compared to the widely-used public tool GEPIA, TNfinder offers more tailored functions including gene signature analysis, T-N cutoff evaluation, population estimation, tumor-specific marker detection, and enhanced visualization options. This app provides biologists with a convenient tool to perform expression analysis in oncology target identification and assessment.
Chengcheng Liu
Roche
The R Shiny app TNfinder for tumor-normal expression analysis
We developed a Shiny application to deliver fast and flexible tumor-normal gene expression analysis based on TCGA and GTEx data. Compared to the widely-used public tool GEPIA, TNfinder offers more tailored functions including gene signature analysis, T-N cutoff evaluation, population estimation, tumor-specific marker detection, and enhanced visualization options. This app provides biologists with a convenient tool to perform expression analysis in oncology target identification and assessment.